# Local agent/platform state. Current App Skill source lives in app-skills/;
# legacy competition Skills live under legacy/competition/ and are never runtime source.
.scienith/

# Secrets and local configuration
.env
.env.*
!.env.example
**/.env
**/.env.*
!**/.env.example

# Python environments, caches, coverage, and reports
.venv/
venv/
**/.venv/
**/venv/
__pycache__/
**/__pycache__/
*.py[cod]
.pytest_cache/
**/.pytest_cache/
.ruff_cache/
**/.ruff_cache/
.mypy_cache/
**/.mypy_cache/
.coverage
.coverage.*
htmlcov/
tests_reports/
**/.run/
**/.runtime/
**/db.sqlite3

# IDE and operating-system state
.DS_Store
**/.DS_Store
.idea/
.vscode/

# Build and runtime logs
*.log
*.exit
build/
dist/
*.egg-info/

# Paper inputs and generated/intermediate artifacts
example/*
!example/convert_xlsx_to_json.py
plan/
*.pdf
*.pptx
*.xlsx
*.png
disease-mechanism-kg-skill-artifact-map.force
disease-mechanism-kg-skill-artifact-map.force.*
.codex/
node_modules/
*.tsbuildinfo
